Organic Chemistry
Interactive university-level guide

Organic Chemistry of the Human Body

Explore the six major families of carbon-based molecules that run human life: carbohydrates, lipids, proteins, nucleic acids, vitamins, and hormones. Each section connects structure to physiological function and metabolism.

CarbohydratesLipidsProteinsNucleic acidsVitaminsHormones

Energy and structure

Carbohydrates

Carbohydrates, also called saccharides, are the most abundant biomolecules on Earth. In the human body they provide rapid energy, store glucose, and contribute to structural and recognition systems.

C

Monosaccharides

Simple sugars contain a carbonyl group and several hydroxyl groups. The main human hexoses share the formula C6H12O6 but differ in arrangement.

  • Glucose: an aldohexose and the primary blood fuel.
  • Fructose: a ketohexose found in fruit and honey.
  • Galactose: a C-4 epimer of glucose and a component of lactose.
General pattern: Cn(H2O)n
OOHHOOHOHOHOHCGlucose

Disaccharides and polysaccharides

SucroseGlucose + fructose; common table sugar.
LactoseGalactose + glucose; milk sugar.
GlycogenHighly branched animal glucose storage in liver and muscle.
CellulosePlant structural glucose polymer; humans cannot digest it.

Core metabolism

Glycolysis converts glucose into pyruvate in the cytosol. Under aerobic conditions, pyruvate feeds acetyl-CoA production and the citric acid cycle.

GlucoseC6 fuel
Glycolysis2 ATP + 2 NADH
Pyruvate2 x C3
Krebs cycleNADH, FADH2, GTP
Quick check
Which animal polysaccharide stores glucose?

Glycogen. Its branched architecture allows rapid glucose release in liver and muscle.

Membranes and energy reserves

Lipids

Lipids are hydrophobic or amphiphilic organic molecules. They store long-term energy, form membranes, insulate tissues, and act as precursors for signaling molecules.

L

Fatty acids

Fatty acids are carboxylic acids with hydrocarbon chains, usually 4 to 24 carbons long.

  • Saturated fatty acids contain only single C-C bonds.
  • Unsaturated fatty acids contain one or more C=C double bonds, usually in cis configuration.
  • Essential fatty acids include linoleic acid (omega-6) and alpha-linolenic acid (omega-3).
CH3OOHfatty acid

Membrane lipids

Phospholipids are amphiphilic: a hydrophilic phosphate head and hydrophobic fatty-acid tails. In water they self-assemble into bilayers, the structural basis of cell membranes.

headhydrophobic tails

Steroids and beta-oxidation

Cholesterol is a steroid membrane component and a precursor for steroid hormones, bile acids, and vitamin D. Fatty acids are degraded in mitochondria by beta-oxidation.

Acyl-CoAactivated fatty acid
Cycleoxidation steps
Acetyl-CoA2-carbon units
ATPvia Krebs + ETC
Quick check
Why are phospholipids called amphiphilic?

They contain both a water-loving phosphate head and water-repelling hydrocarbon tails.

Structure becomes function

Proteins

Proteins are polymers of amino acids. Their biological role depends on their sequence, folding, interactions, and cellular context.

P

Amino acids

Each amino acid has an alpha carbon bonded to an amino group, a carboxyl group, hydrogen, and a variable R group that determines chemical behavior.

NonpolarAla, Val, Leu, Ile, Pro, Phe, Trp, Met.
Polar unchargedSer, Thr, Cys, Tyr, Asn, Gln.
Charged positiveLys, Arg, His.
Charged negativeAsp, Glu.
CHCOOHNH2R

Peptide bonds

A peptide bond is a covalent amide bond formed by condensation between the carboxyl group of one amino acid and the amino group of the next. The reaction releases water.

amino acid + amino acid -> peptide + H2O

Four levels of structure

Level Meaning
Primary Linear amino-acid sequence encoded by DNA.
Secondary Local alpha helices and beta sheets stabilized by hydrogen bonds.
Tertiary Full 3D fold of one polypeptide chain.
Quaternary Assembly of multiple subunits, as in hemoglobin.
Quick check
What bond links amino acids in proteins?

The peptide bond, a planar covalent amide linkage.

Information chemistry

Nucleic Acids

DNA and RNA store, transmit, and express genetic information. Their polymers are built from nucleotides.

NA

Nucleotide anatomy

Each nucleotide contains a phosphate group, a pentose sugar, and a nitrogenous base.

  • Bases: purines A/G and pyrimidines C/T/U.
  • Sugar: deoxyribose in DNA, ribose in RNA.
  • Backbone: phosphodiester bonds connect nucleotides 5' to 3'.
PO4sugarbase

DNA versus RNA

Feature DNA RNA
Sugar Deoxyribose Ribose
Bases A, T, G, C A, U, G, C
Structure Usually double-stranded Usually single-stranded
Main role Genetic storage Genetic expression

Central dogma

DNAstorage
TranscriptionRNA copy
mRNAmessage
Proteintranslation

Base pairing follows complementarity: A pairs with T in DNA, A pairs with U in RNA, and G pairs with C.

Quick check
Which base appears in RNA but not DNA?

Uracil. RNA uses A, U, G, and C.

Micronutrient chemistry

Vitamins

Vitamins are essential organic micronutrients required in small amounts. They do not provide energy directly, but many act as coenzyme precursors or regulatory molecules.

V

Fat-soluble vitamins

Vitamins A, D, E, and K dissolve in lipids, depend on dietary fat for absorption, and can accumulate in the liver or adipose tissue.

Vitamin AVision, epithelial growth, immune function.
Vitamin DCalcium absorption and bone mineralization.
Vitamin EAntioxidant protection of membranes.
Vitamin KBlood clotting factor activation.

Water-soluble vitamins

Vitamin C and the B-complex vitamins dissolve in water. Most are not stored extensively and require regular intake.

  • Vitamin C supports collagen synthesis, antioxidant defense, wound healing, and immune function.
  • B vitamins support carbohydrate, lipid, amino-acid, DNA, and red-blood-cell metabolism through coenzymes.
  • Vitamin B12 is an exception because it can be stored and is essential for nerve function.
Quick check
Which vitamin is made in skin after sunlight exposure?

Vitamin D, produced when UVB radiation converts a cholesterol-derived precursor.

Chemical messengers

Hormones

Hormones are chemical messengers released by endocrine tissues into the bloodstream. They regulate growth, metabolism, reproduction, stress response, and homeostasis.

H

Chemical classes

Peptide and protein hormonesInsulin, glucagon, and growth hormone. Water-soluble; bind membrane receptors.
Steroid hormonesCortisol, aldosterone, testosterone, estrogens. Cholesterol-derived; bind intracellular receptors.
Amino-acid derivativesEpinephrine, norepinephrine, and thyroid hormones. Mechanism depends on solubility.

Mechanisms of action

Peptide hormones usually trigger membrane receptors, G proteins, tyrosine kinases, or second messengers such as cAMP and calcium. Steroid hormones cross membranes and regulate gene expression through intracellular receptors.

Insulin and glucagon

Blood glucose regulation is a classic negative-feedback loop.

High glucoseafter meal
Insulinstorage signal
Low glucosefasting
Glucagonrelease signal

Why chemistry matters

The same carbon-based principles explain membrane permeability, receptor location, signal speed, half-life, and the difference between rapid metabolic responses and long-term gene regulation.

Quick check
Why do steroid hormones often act more slowly than peptide hormones?

They typically regulate transcription inside the cell, so the response depends on gene expression and protein synthesis.

System view

How the families fit together

Human organic chemistry is not six isolated chapters. Biomolecules share carbon skeletons, functional groups, energy carriers, and regulatory feedback loops.

6

Energy flow

Carbohydrates and lipids feed ATP production through glycolysis, beta-oxidation, acetyl-CoA, the citric acid cycle, and oxidative phosphorylation.

Information flow

Nucleic acids encode proteins; proteins catalyze DNA replication, transcription, translation, and most metabolic reactions.

Regulation

Vitamins support enzyme chemistry, while hormones coordinate cell behavior across tissues and maintain homeostasis.